Thursday, April 19, 2012

If you're reading this, you might be a baboon

Scientists have found that baboons are adept at pattern recognition, being able to?distinguish between real and fake four-letter words about three out of four times.

Dan the?baboon?sits in front of a computer screen. The letters BRRU pop up. With a quick and almost dismissive tap, the monkey signals it is not a word. Correct. Next comes, ITCS. Again, not a word. Finally KITE comes up.

Skip to next paragraph

He pauses and hits a green oval to show it is a word. In the space of just a few seconds, Dan has demonstrated a mastery of what some experts say is a form of pre-reading and walks away rewarded with a treat of dried wheat.

Dan is part of new research that shows?baboons?are able to pick up the first step in reading ? identifying recurring patterns and determining which four-letter combinations are words and which are just gobbledygook.

The study shows that reading's early steps are far more instinctive than scientists first thought and it also indicates that non-human primates may be smarter than we give them credit for.

"They've got the hang of this thing," said Jonathan Grainger, a French scientist and lead author of the research.

Baboons?and other monkeys are good pattern finders and what they are doing may be what we first do in recognizing words.

It's still a far cry from real reading. They don't understand what these words mean, and are just breaking them down into parts, said Grainger, a cognitive psychologist at the Aix-Marseille University in France.

In 300,000 tests, the six?baboons?distinguished between real and fake words about three-out-of-four times, according to the study published in Thursday's journal Science.

The 4-year-old Dan, the star of the bunch and about the equivalent age of a human teenager, got 80 percent of the words right and learned 308 four-letter words.

The?baboons?are rewarded with food when they press the right spot on the screen: A blue plus sign for bogus combos or a green oval for real words.

Even though the experiments were conducted in France, the researchers used English words because it is the language of science, Grainger said.

The key is that these animals not only learned by trial and error which letter combinations were correct, but they also noticed which letters tend to go together to form real words, such as SH but not FX, said Grainger. So even when new words were sprung on them, they did a better job at figuring out which were real.

Grainger said a pre-existing capacity in the brain may allow them to recognize patterns and objects, and perhaps that's how we humans also first learn to read.

The study's results were called "extraordinarily exciting" by another language researcher, psychology professor Stanislas Dehaene at the College of France, who wasn't part of this study. He said Grainger's finding makes sense. Dehaene's earlier work says a distinct part of the brain visually recognizes the forms of words. The new work indicates this is also likely in a non-human primate.

This new study also tells us a lot about our distant primate relatives.

"They have shown repeatedly amazing cognitive abilities," said study co-author Joel Fagot, a researcher at the French National Center for Scientific Research.

Bill Hopkins, a professor of psychology at the Yerkes Primate Center in Atlanta, isn't surprised.

"We tend to underestimate what their capacities are," said Hopkins, who wasn't part of the French research team. "Non-human primates are really specialized in the visual domain and this is an example of that."

This raises interesting questions about how the complex primate mind works without language or what we think of as language, Hopkins said. While we use language to solve problems in our heads, such as deciphering words, it seems that?baboons?use a "remarkably sophisticated" method to attack problems without language, he said.

Key to the success of the experiment was a change in the testing technique, the researchers said. Thebaboons?weren't put in the computer stations and forced to take the test. Instead, they could choose when they wanted to work, going to one of the 10 computer booths at any time, even in the middle of the night.

The most ambitious?baboons?test 3,000 times a day; the laziest only 400.

The advantage of this type of experiment setup, which can be considered more humane, is that researchers get far more trials in a shorter time period, he said.

"They come because they want to," Fagot said. "What do they want? They want some food. They want to solve some task."

amber portwood cujo greg kelly karen handel hangout todd haley kareem abdul jabbar

Xournal Makes Short Work Out of Longhand

Regardless of how good they are, some Linux applications have very little appeal to all but users with specialized needs. That is not the case with Xournal. Even if you do not use a tablet for inputing notes, this app still lets you create with style. If you are looking for a very handy note-taking application, check out Xournal.


uc davis pepper spray uc davis pepper spray usc oregon big game jeremy london jeremy london butterball turkey fryer

Around the Web?

Mark the midweek point by reading Wednesday’s best links: Australian company rewards new moms with increased salary ? HuffPost Money Small stores excel at providing guidance for breastfeeding moms ? The New York Times Why cavities are on the rise among preschoolers ? BreezyMama.com Would you let a cake tell you your baby’s gender? ? [...]

gallagher madmen james cameron liam hemsworth hunger games miss canada justin bieber boyfriend

From the Android Forums: Using a UK HTC Sensation in New York

Sensation

SteveDisco asks in the Android Central Forums,

I would like to know if it is possible to access 3G on my UK HTC Sensation when I go to New York next month on a U.S. SIM card? My limited understanding is that the frequencies used for U.S. phones are different to those in the UK but am unclear if the Sensation will still be able to access. If it is not possible could I just use a US SIM for voice calls and rely on WiFi access?

Thanks

Great question, with several good answers. Basically, yes, you can use your UK model HTC Sensation for 3G data in New York. The European Sensation uses a quad-band GSM radio that supports the frequencies used by AT&T here in the states. You'll need to make sure your Sensation is fully SIM unlocked (talk to your current carrier if you're unsure), and then you'll be ready to do a little research and make a decision.

In the U.S., there are only two GSM operators -- T-Mobile and AT&T. But there are many MVNO networks (Mobile Virtual Network Operators) who rent and resell network space from either one, or even both. You'll not be interested in T-Mobile or any MVNOs using the T-Mobile frequencies, as your Sensation doesn't support them. But that's OK, as your choices are still pretty broad.

Here's a small list of a few different operators that will sell you a no-contract SIM card to use while you're visiting:

Don't be fooled by the words unlimited, as this refers to voice calls. Data rates will cost anywhere between $5 USD for 5MB to $20 USD for 2GB. Of course, this is just a few of the many out there, and you'll have to scour the web to see all the options. In the end, they all use the same network, so the deciding factor is price and how easy it is to get your SIM card and activation. 

Have fun in New York!



front door alyssa bustamante protandim weightless ellen degeneres jcpenney yeardley love nba all star reserves

BN Nook Simple Touch with GlowLight

  If you read your ebook reader a lot at night or in the dark, then throw away those additional lights or lighted cases. ?Barnes and Noble have up for pre-order their Nook Simple Touch with Glowlight. ?With a click of a switch you can turn on the GlowLight to illuminate the e-ink display. ?Brightness [...]

file taxes online tupac shakur sledge hammer tax day freebies madison bumgarner wnba draft tax day

Study dusts sugar coating off little-known regulation in cells

Tuesday, April 17, 2012

In Alzheimer's disease, brain neurons become clogged with tangled proteins. Scientists suspect these tangles arise partly due to malfunctions in a little-known regulatory system within cells. Now, researchers have dramatically increased what they know about this particular regulatory system in mice. Such information will help scientists better understand Alzheimer's and other diseases in humans and could eventually provide new targets for therapies.

In a study released online in the Proceedings of the National Academy of Sciences Early Edition this week, the team at least doubled the number of proteins found to be subject to a type of regulation based on a sugar known as O-GlcNAc (oh-GLIK-nak). The O-GlcNAc system likely adds another layer of control to the proteins that serve as a brain cell's widgets and gears -- control that might be muddled in Alzheimer's brains known to have problems in sugar metabolism.

"We found many novel proteins providing insights into new aspects of cell biology," said analytical biochemist Feng Yang of the Department of Energy's Pacific Northwest National Laboratory and lead author on the study. "We think O-GlcNAc is fine-tuning cellular processes."

In addition to finding hundreds of proteins modified by O-GlcNAc, the team found that almost all the O-GlcNAc proteins were also subject to the most common form of protein regulation, which uses small phosphate molecules to turn proteins on and off. This suggests a larger coordination between the two regulatory systems.

"These results show there's a level of complexity about how biology operates that we've been largely blind to," said PNNL's Richard D. Smith, who leads the proteomics team at PNNL. Proteomics researchers try to understand how a cell functions based on the numbers and types of its proteins at work, which are collectively known as the proteome (PRO-tee-ohm).

"Back during the Human Genome Project, we asked, how could so few genes produce the complexity of an organism or even a single cell, and how could minor variations in our DNA explain the diversity we see all around us? Clearly the proteome is the answer," said Smith.

Sugar Switch

Proteins are the tools, gears and gadgets that run a cell. Regulatory systems within cells turn proteins on and off by attaching or detaching small molecules to the proteins, like a switch. The most common switch involve adding or removing phosphates, and biologists have known for a long time that these switches can run amiss in cancer and other diseases. Drugs affect players in the phosphate regulatory system to try to fix the errors.

A couple decades ago, researchers found that O-GlcNAc, a kind of sugar, could also work like a switch, turning proteins on or off. Scientists found proteins decorated by O-GlcNAc, as well as other proteins that attach or remove the sugar -- all essential parts to the system.

But they had trouble finding enough O-GlcNAc proteins to get the whole story. Few proteins bore the small sugar, and those that did tended to lose the accessory while being manhandled in the lab. Researchers could make up for some of these problems by starting with more tissue or cultured cells, but they knew if they wanted to look for these modifications in real-life scenarios such as clinical samples, they would need to be able to find the sugar with a small amount of starting material.

To overcome these difficulties, Smith, Yang and their colleagues at PNNL and four research institutions combined their expertise in the O-GlcNAc system with instruments developed at EMSL, DOE's Environmental Molecular Sciences Laboratory on the PNNL campus. First they improved how they purified protein from mouse brain tissue to reinforce the sugar attached to proteins. Then they used instruments that exceled at detecting rare proteins in small samples.

In addition, they looked for the sugar-dotted proteins in mouse brain samples from engineered animals that had a mouse version of Alzheimer's. These mice make too much of three key proteins implicated in Alzheimer's disease in people, including the Tau protein, which forms the hallmark tangles in brain neurons.

Pack o' Proteins

To test how well their methods found O-GlcNAc proteins, the PNNL-led team started with tissue from either healthy or diseased mouse brain tissue. From the healthy tissue, the team found 274 different proteins marked with O-GlcNAc. Many of them sported more than one sugar molecule, because the team found a total of 458 attachment sites on those 274 proteins -- triple the number of sites found in any previous study. The large number of sites allowed the team to identify similarities between O-GlcNAc sites, as well as O-GlcNAc sites on previously unexplored proteins.

Of the 274 O-GlcNAc proteins, 106 had already been identified in other studies. That left 168 newly-identified proteins. Based on what the proteins looked like, the team classified most of them as likely being involved in cell signaling, regulating how genes are expressed, or, again, in cell scaffolding.

The O-GlcNAc-dabbed proteins held a variety of jobs, including forming part of a cell's scaffolding, or in nerve growth or in other nerve-related occupations such as learning and memory.

The PNNL-led team then looked at the proteins found in the Alzheimer's-like mouse brain. They found about a third fewer O-GlcNAc-marked proteins. That result also supports earlier work that suggested there is damaged O-GlcNAc regulation in Alzheimer's brains in people.

Fraternizing Phosphates and Other Biology

One of the more exciting things the researchers found had to do with the most common regulatory system in cells, the phosphate system. More than 98 percent of the O-GlcNAc proteins also had sites that would accept a phosphate, suggesting those proteins are also under the control of that system.

And about a quarter of the O-GlcNAc sites were close enough to the phosphate sites to interfere with that switch, suggesting cross-talk between the two types of regulation. A phosphate is smaller than O-GlcNAc and has a strong negative electrical charge. The sugar is neutral but bulkier. Those characteristics could have different effects on the structure of the protein and greatly increases the range of possible biological effects due to the complexity of the combined switching systems.

Lastly, until this study, most of the proteins known to be under O-GlcNAc control largely live their lives within the cells. But the PNNL-led team found a half-dozen proteins that had to be controlled by O-GlcNAc outside a cell, based on where their O-GlcNAc site fell on the body of the protein.

Now, the team is planning to measure both regulatory systems in concert.

"It's revealing to see how many proteins are modified. If we're going to understand biological systems, we need to understand the interplay of the different types of modifications," said Smith.

###

DOE/Pacific Northwest National Laboratory: http://www.pnnl.gov/news

Thanks to DOE/Pacific Northwest National Laboratory for this article.

This press release was posted to serve as a topic for discussion. Please comment below. We try our best to only post press releases that are associated with peer reviewed scientific literature. Critical discussions of the research are appreciated. If you need help finding a link to the original article, please contact us on twitter or via e-mail.

This press release has been viewed 19 time(s).

alaska weather gop debate live gop debate live nome alaska nome alaska alaska map bil keane

Space shuttle Discovery takes off on final flight to museum

[ [ [['A picture is worth a thousand words', 5]], 'http://news.yahoo.com/why-facebook-bought-instagram-4-theories-160400376.html', '[Related: Why Facebook bought Instagram: 4 theories]', ' ', '630', ' ', ' ', ], [ [['He was in shock and still strapped to his seat', 9]], 'http://contributor.yahoo.com/join/yahoonews_virginiabeach', '[Did you witness the jet crash? Share your story with Yahoo! News]', ' ', '630', ' ', ' ', ], [ [['A JetBlue flight from New York to Las Vegas', 3]], 'http://yhoo.it/GV9zpj', '[Related: View photos of the JetBlue plane in Amarillo]', ' ', '630', ' ', ' ', ], [ [['the 28-year-old neighborhood watchman who shot and killed', 15]], 'http://news.yahoo.com/photos/white-house-stays-out-of-teen-s-killing-slideshow/', 'Click image to see more photos', 'http://l.yimg.com/cv/ip/ap/default/120411/martinzimmermen.jpg', '630', ' ', 'AP', ], [ [['Titanic', 7]], 'http://news.yahoo.com/titanic-anniversary/', ' ', 'http://l.yimg.com/a/p/us/news/editorial/b/4e/b4e5ad9f00b5dfeeec2226d53e173569.jpeg', '550', ' ', ' ', ], [ [['He was in shock and still strapped to his seat', 6]], 'http://news.yahoo.com/photos/navy-jet-crashes-in-virginia-slideshow/', 'Click image to see more photos', 'http://l.yimg.com/cv/ip/ap/default/120406/jet_ap.jpg', '630', ' ', 'AP', ], [ [['xxxxxxxxxxxx', 11]], 'http://news.yahoo.com/photos/russian-grannies-win-bid-to-sing-at-eurovision-1331223625-slideshow/', 'Click image to see more photos', 'http://l.yimg.com/a/p/us/news/editorial/1/56/156d92f2760dcd3e75bcd649a8b85fcf.jpeg', '500', ' ', 'AP', ] ]

[ [ [[' the 28-year-old neighborhood watchman who shot and killed', 4]], '28924649', '0' ], [ [['because I know God protects me', 14], ['Brian Snow was at a nearby credit union', 5]], '28811216', '0' ], [ [['The state news agency RIA-Novosti quoted Rosaviatsiya', 6]], '28805461', '0' ], [ [['measure all but certain to fail in the face of bipartisan', 4]], '28771014', '0' ], [ [['matter what you do in this case', 5]], '28759848', '0' ], [ [['presume laws are constitutional', 7]], '28747556', '0' ], [ [['has destroyed 15 to 25 houses', 7]], '28744868', '0' ], [ [['short answer is yes', 7]], '28746030', '0' ], [ [['opportunity to tell the real story', 7]], '28731764', '0' ], [ [['entirely respectable way to put off the searing constitutional controversy', 7]], '28723797', '0' ], [ [['point of my campaign is that big ideas matter', 9]], '28712293', '0' ], [ [['As the standoff dragged into a second day', 7]], '28687424', '0' ], [ [['French police stepped up the search', 17]], '28667224', '0' ], [ [['Seeking to elevate his candidacy back to a general', 8]], '28660934', '0' ], [ [['The tragic story of Trayvon Martin', 4]], '28647343', '0' ], [ [['Karzai will get a chance soon to express', 8]], '28630306', '0' ], [ [['powerful storms stretching', 8]], '28493546', '0' ], [ [['basic norm that death is private', 6]], '28413590', '0' ], [ [['songwriter also saw a surge in sales for her debut album', 6]], '28413590', '1', 'Watch music videos from Whitney Houston ', 'on Yahoo! Music', 'http://music.yahoo.com' ], [ [['keyword', 99999999999999999999999]], 'videoID', '1', 'overwrite-pre-description', 'overwrite-link-string', 'overwrite-link-url' ] ]

asteroid russell pearce russell pearce emergency alert system 2011 election results 11/11/11 11 11 11

Wednesday, April 4, 2012

Daniels, hopefuls support Indiana corn ethanol

[ [ [['beyond the incredible personal tragedy', 3]], 'http://news.yahoo.com/stand-ground-laws-not-just-gop-policy-records-053103956.html', '[Related: \?Stand your ground\? laws not just GOP policy\, records show]', ' ', '630', ' ', ' ', ], [ [['A JetBlue flight from New York to Las Vegas', 3]], 'http://yhoo.it/GV9zpj', '[Related: View photos of the JetBlue plane in Amarillo]', ' ', '630', ' ', ' ', ], [ [['Afghan security forces and police killed three', 3]], 'http://yhoo.it/H9BcJE', '[Related: Bales\' wife on his alleged shooting: \'He would not do that\']', ' ', '630', ' ', ' ', ], [ [['looking for fireworks between the opposing camps', 16]], 'http://yhoo.it/GSvEsj', '[RELATED:\?It?s going to be a circus\?: Activists begin protests outside Supreme Court]', ' ', '630', ' ', ' ', ], [ [['entirely respectable way to put off the searing constitutional controversy', 8]], 'http://yhoo.it/GE6jSh', '[RELATED: Obama\?s health care law passed 2 years ago, but where are we now\?]', ' ', '630', ' ', ' ', ], [ [['Witnesses said the gunman pulled up on a black scooter', 7]], 'http://yhoo.it/GzwOIW', '[Related: New York police tighten security at Jewish sites]', ' ', '630', ' ', ' ', ], [ [['test Zimmerman for alcohol or drugs', 11]], 'http://yhoo.it/Gzn6VF', '[Related: White House says Trayvon Martin is local issue]', ' ', '630', ' ', ' ', ], [ [['This is as serious of a tornado', 7]], 'http://news.yahoo.com/photos/tornadoes-touch-down-in-texas-slideshow/', 'Click image to see more photos', 'http://l.yimg.com/cv/ip/ap/default/120403/trucksdallas.jpg', '630', ' ', 'Reuters', ], [ [['Oikos University', 8]], 'http://news.yahoo.com/photos/deadly-oakland-university-shooting-slideshow/', 'Click image to see more photos', 'http://l.yimg.com/cv/ip/ap/default/120402/shooting.jpg', '450', ' ', 'REUTERS/Reuters TV/KNTV/Handout', ], [ [['Trayvon Martin decked the Neighborhood', 7]], 'http://yhoo.it/GUovUP', 'Click image to see more photos', 'http://l.yimg.com/a/p/us/news/editorial/2/61/261d2c36bccf0971c2734a4d4398aa5a.jpeg', '512', ' ', 'AP/David Goldman', ], [ [['Can you create commerce in order to regulate it', 9]], 'http://yhoo.it/GSgtu8', 'Click image to see more photos', 'http://l.yimg.com/a/p/us/news/editorial/7/78/778e2416573870cd705774e92403447d.jpeg', '630', ' ', 'AP/Charles Dharapak', ], [ [['associated with such a small earthquake', 4]], 'http://yhoo.it/GTco9z', 'Click image to see more photos', 'http://l.yimg.com/a/p/us/news/editorial/0/b4/0b493c1a47b6e3f97f8f48a2b251d7d4.jpeg', '630', ' ', 'AP Photo/Carrie Antlfinger', ], [ [['Fox News host Geraldo Rivera sparked outrage', 3]], 'http://yhoo.it/GKMVTk', 'Click image to see more photos', 'http://l.yimg.com/a/p/us/news/editorial/2/7c/27c7367bc512d233ae1790b320a5e92c.jpeg', '630', ' ', 'AP Photo/John Minchillo', ], [ [['The charges signed against Bales include', 1]], 'http://yhoo.it/wZT5zV', 'Click image to see more photos', 'http://l.yimg.com/a/p/us/news/editorial/7/a0/7a07c51b2aa0f39b1a23355046d13870.jpeg', '512', ' ', 'AP Photo/DVIDS\, Spc\. Ryan Hallock\, File', ], [ [['George Zimmerman, if I had a son', 6]], 'http://news.yahoo.com/photos/thousands-protest-fla-teen-death-1332387124-slideshow/', 'Click image to see more photos', 'http://l.yimg.com/os/152/2012/03/22/d761a49f3fcc99080a0f6a70670053cd-jpg_150905.jpg', '500', ' ', 'AP Photo/John Minchillo', ], [ [['xxxxxxxxxxxx', 11]], 'http://news.yahoo.com/photos/russian-grannies-win-bid-to-sing-at-eurovision-1331223625-slideshow/', 'Click image to see more photos', 'http://l.yimg.com/a/p/us/news/editorial/1/56/156d92f2760dcd3e75bcd649a8b85fcf.jpeg', '500', ' ', 'AP', ] ]

[ [ [['because I know God protects me', 14], ['Brian Snow was at a nearby credit union', 5]], '28811216', '0' ], [ [['The state news agency RIA-Novosti quoted Rosaviatsiya', 6]], '28805461', '0' ], [ [['measure all but certain to fail in the face of bipartisan', 4]], '28771014', '0' ], [ [['matter what you do in this case', 5]], '28759848', '0' ], [ [['presume laws are constitutional', 7]], '28747556', '0' ], [ [['has destroyed 15 to 25 houses', 7]], '28744868', '0' ], [ [['short answer is yes', 7]], '28746030', '0' ], [ [['opportunity to tell the real story', 7]], '28731764', '0' ], [ [['entirely respectable way to put off the searing constitutional controversy', 7]], '28723797', '0' ], [ [['point of my campaign is that big ideas matter', 9]], '28712293', '0' ], [ [['As the standoff dragged into a second day', 7]], '28687424', '0' ], [ [['French police stepped up the search', 17]], '28667224', '0' ], [ [['Seeking to elevate his candidacy back to a general', 8]], '28660934', '0' ], [ [['The tragic story of Trayvon Martin', 4]], '28647343', '0' ], [ [['Karzai will get a chance soon to express', 8]], '28630306', '0' ], [ [['powerful storms stretching', 8]], '28493546', '0' ], [ [['basic norm that death is private', 6]], '28413590', '0' ], [ [['songwriter also saw a surge in sales for her debut album', 6]], '28413590', '1', 'Watch music videos from Whitney Houston ', 'on Yahoo! Music', 'http://music.yahoo.com' ], [ [['keyword', 99999999999999999999999]], 'videoID', '1', 'overwrite-pre-description', 'overwrite-link-string', 'overwrite-link-url' ] ]

nick carter leslie carter aaron carter sister pfizer signing day 2012 football gasland college football recruiting